Visualize knowledge lineage utilizing Amazon SageMaker Catalog for Amazon EMR, AWS Glue, and Amazon Redshift

Amazon SageMaker provides a complete hub that integrates knowledge, analytics, and AI capabilities, offering a unified expertise for customers to entry and work with their knowledge. By way of Amazon SageMaker Unified Studio, a single and unified surroundings, you should utilize a variety of instruments and options to assist your knowledge and AI improvement wants, together with knowledge processing, SQL analytics, mannequin improvement, coaching, inference, and generative AI improvement. This providing is additional enhanced by the combination of Amazon Q and Amazon SageMaker Catalog, which offer an embedded generative AI and governance expertise, serving to customers work effectively and successfully throughout your entire knowledge and AI lifecycle, from knowledge preparation to mannequin deployment and monitoring.

With the SageMaker Catalog knowledge lineage characteristic, you may visually monitor and perceive the move of your knowledge throughout completely different techniques and groups, gaining an entire image of your knowledge property and the way they’re linked. As an OpenLineage-compatible characteristic, it helps you hint knowledge origins, monitor transformations, and think about cross-organizational knowledge consumption, supplying you with insights into cataloged property, subscribers, and exterior actions. By capturing lineage occasions from OpenLineage-enabled techniques or by way of APIs, you may acquire a deeper understanding of your knowledge’s journey, together with actions inside SageMaker Catalog and past, finally driving higher knowledge governance, high quality, and collaboration throughout your group.

Moreover, the SageMaker Catalog knowledge lineage characteristic variations every occasion, so you may monitor modifications, visualize historic lineage, and examine transformations over time. This supplies worthwhile insights into knowledge evolution, facilitating troubleshooting, auditing, and knowledge integrity by exhibiting precisely how knowledge property have developed, and generates belief in knowledge.

On this put up, we focus on the visualization of knowledge lineage in SageMaker Catalog and the way seize lineage from completely different AWS analytics providers akin to AWS Glue, Amazon Redshift, and Amazon EMR Serverless routinely, and visualize it with SageMaker Unified Studio.

Answer overview

The technology of knowledge lineage in SageMaker Catalog operates by way of an automatic system that captures metadata and relationships between completely different knowledge artifacts for AWS Glue, Amazon EMR, and Amazon Redshift. When knowledge strikes by way of numerous AWS providers, SageMaker routinely tracks these actions, transformations, and dependencies, creating an in depth map of the info’s journey. This monitoring consists of details about knowledge sources, transformations, processing steps, and remaining outputs, offering an entire audit path of knowledge motion and transformation.

The implementation of knowledge lineage in SageMaker Catalog provides a number of key advantages:

• Compliance and audit assist – Organizations can exhibit compliance with regulatory necessities by exhibiting full knowledge provenance and transformation historical past
• Affect evaluation – Groups can assess the potential influence of modifications to knowledge sources or transformations by understanding dependencies and relationships within the knowledge pipeline
• Troubleshooting and debugging – When points come up, the lineage system helps determine the foundation trigger by exhibiting the entire path of knowledge transformation and processing
• Information high quality administration – By monitoring transformations and dependencies, organizations can higher keep knowledge high quality and perceive how knowledge high quality points would possibly propagate by way of their techniques

Lineage seize is automated utilizing a number of instruments in SageMaker Unified Studio. To be taught extra, check with Information lineage assist matrix.

Within the following sections, we present you how one can configure your sources and implement the answer. For this put up, we create the answer sources within the us-west-2 AWS Area utilizing an AWS CloudFormation template.

Conditions

Earlier than getting began, be sure you have the next:

Configure SageMaker Unified Studio with AWS CloudFormation

The vpc-analytics-lineage-sus.yaml stack creates a VPC, subnet, safety group, IAM roles, NAT gateway, web gateway, Amazon Elastic Compute Cloud (Amazon EC2) consumer, S3 buckets, SageMaker Unified Studio area, and SageMaker Unified Studio mission. To create the answer sources, full the next steps:

1. Launch the stack vpc-analytics-lineage-sus utilizing the CloudFormation template:
   
2. Present the parameter values as listed within the following desk.
   

   Parameters	Pattern worth
   DatazoneS3Bucket	s3://datazone-{account_id}/
   DomainName	dz-studio
   EnvironmentName	sm-unifiedstudio
   PrivateSubnet1CIDR	10.192.20.0/24
   PrivateSubnet2CIDR	10.192.21.0/24
   PrivateSubnet3CIDR	10.192.22.0/24
   ProjectName	sidproject
   PublicSubnet1CIDR	10.192.10.0/24
   PublicSubnet2CIDR	10.192.11.0/24
   PublicSubnet3CIDR	10.192.12.0/24
   UsersList	analyst
   VpcCIDR	10.192.0.0/16

The stack creation course of can take roughly 20 minutes to finish. You’ll be able to examine the Outputs tab for the stack after the stack is created.

Subsequent, we put together supply knowledge, setup the AWS Glue ETL Job, Amazon EMR Serverless Spark Job and Amazon Redshift Job to generate the lineage and seize lineage from Amazon SageMaker Unified Studio

Put together knowledge

The next is instance knowledge from our CSV recordsdata:

attendance.csv

EmployeeID,Date,ShiftStart,ShiftEnd,Absent,OvertimeHours
E1000,2024-01-01,2024-01-01 08:00:00,2024-01-01 16:22:00,False,3
E1001,2024-01-08,2024-01-08 08:00:00,2024-01-08 16:38:00,False,2
E1002,2024-01-23,2024-01-23 08:00:00,2024-01-23 16:24:00,False,3
E1003,2024-01-09,2024-01-09 10:00:00,2024-01-09 18:31:00,False,0
E1004,2024-01-15,2024-01-15 09:00:00,2024-01-15 17:48:00,False,1

staff.csv

EmployeeID,Identify,Division,Position,HireDate,Wage,PerformanceRating,Shift,Location
E1000,Employee_0,High quality Management,Operator,2021-08-08,33002.0,1,Evening,Plant C
E1001,Employee_1,Upkeep,Supervisor,2015-12-31,69813.76,5,Night,Plant B
E1002,Employee_2,Manufacturing,Technician,2015-06-18,46753.32,1,Night,Plant A
E1003,Employee_3,Admin,Supervisor,2020-10-13,52853.4,5,Evening,Plant A
E1004,Employee_4,High quality Management,Supervisor,2023-09-21,55645.27,5,Night,Plant A

Add the pattern knowledge from attendance.csv and staff.csv to the S3 bucket specified within the earlier CloudFormation stack (s3://datazone-{account_id}/csv/).

Ingest worker knowledge in Amazon Relational Database Dervice (Amazon RDS) for MySQL desk

On the CloudFormation console, open the stack vpc-analytics-lineage-sus and acquire the Amazon RDS for MySQL database endpoint to make use of within the following instructions to create a default employeedb database.

1. Connect with Amazon EC2 occasion with mysql bundle set up
2. Run the next command to connect with the database

   >MySQL -u admin -h database-1.cuqd06l5efvw.us-west-2.rds.amazonaws.com -p

3. Run the next command to create an worker desk

   Use employeedb;
   
   CREATE TABLE worker (
     EmployeeID longtext,
     Identify longtext,
     Division longtext,
     Position longtext,
     HireDate longtext,
     Wage longtext,
     PerformanceRating longtext,
     Shift longtext,
     Location longtext
   );

4. Operating the next command to insert rows.

   INSERT INTO worker (EmployeeID, Identify, Division, Position, HireDate, Wage, PerformanceRating, Shift, Location) VALUES ('E1000', 'Employee_0', 'High quality Management', 'Operator', '2021-08-08', 33002.00, 1, 'Evening', 'Plant C'), ('E1001', 'Employee_1', 'Upkeep', 'Supervisor', '2015-12-31', 69813.76, 5, 'Night', 'Plant B'), ('E1002', 'Employee_2', 'Manufacturing', 'Technician', '2015-06-18', 46753.32, 1, 'Night', 'Plant A'), ('E1003', 'Employee_3', 'Admin', 'Supervisor', '2020-10-13', 52853.40, 5, 'Evening', 'Plant A'), ('E1004', 'Employee_4', 'High quality Management', 'Supervisor', '2023-09-21', 55645.27, 5, 'Night', 'Plant A');

Seize lineage from AWS Glue ETL job and pocket book

To exhibit the lineage, we arrange an AWS Glue extract, remodel, and cargo (ETL) job to learn the worker knowledge from an Amazon RDS for MySQL desk and the worker attendance knowledge from Amazon S3, and be part of each datasets. Lastly, we write the info to Amazon S3 and create the attendance_with_emp1 desk within the AWS Glue Information Catalog.

Create and configure AWS Glue job for lineage technology

Full the next steps to create your AWS Glue ETL job:

1. On the AWS Glue console, create a brand new ETL job with AWS Glue model 5.0.
2. Allow Generate lineage occasions and supply the area ID (retrieve from the CloudFormation template output for DataZoneDomainid; it should have the format dzd_xxxxxxxx)
   
3. Use the next code snippet within the AWS Glue ETL job script. Present the S3 bucket (bucketname-{account_id}) used within the previous CloudFormation stack.

   from pyspark.sql import SparkSession
   from pyspark.sql import SparkSession, DataFrame
   from pyspark.sql.capabilities import *
   from pyspark.sql.varieties import *
   from pyspark import SparkContext
   from pyspark.sql import SparkSession
   import sys
   import logging
   
   
   spark = SparkSession.builder.appName("lineageglue").enableHiveSupport().getOrCreate()
    
   connection_details = glueContext.extract_jdbc_conf(connection_name="connectionname")
   
   employee_df = spark.learn.format("jdbc").choice("url", "jdbc:MySQL://dbhost:3306/database_name").choice("dbtable", "worker").choice("person", connection_details['user']).choice("password", connection_details['password']).load()
   
   s3_paths = {
   'absent_data': 's3://bucketname-{account_id}/csv/attendance.csv'
   }
   absent_df = spark.learn.csv(s3_paths['absent_data'], header=True, inferSchema=True)
   
   joined_df = employee_df.be part of(absent_df, on="EmployeeID", how="interior")
   
   joined_df.write.mode("overwrite").format("parquet").choice("path", "s3://datazone-{account_id}/attendanceparquet/").saveAsTable("gluedbname.tablename")

4. Select Run to begin the job.
5. On the Runs tab, affirm the job ran with out failure.
   
6. After the job has executed efficiently, navigate to the SageMaker Unified Studio area.
7. Select Venture and below Overview, select Information Sources.
8. Choose the Information Catalog supply (accountid-AwsDataCatalog-glue_db_suffix-default-datasource).
9. On the Actions dropdown menu, select Edit.
   
10. Below Connection, allow Import knowledge lineage.
11. Within the Information Choice part, below Desk Choice Standards, present a desk title or use * to generate lineage.
12. Replace the info supply and select Run to create an asset known as attendance_with_emp1 in SageMaker Catalog.
13. Navigate to Property, select the attendance_with_emp1 asset, and navigate to the LINEAGE part.

The next lineage diagram reveals an AWS Glue job that integrates knowledge from two sources: worker info saved in Amazon RDS for MySQL and worker absence data saved in Amazon S3. The AWS Glue job combines these datasets by way of a be part of operation, then creates a desk within the Information Catalog and registers it as an asset in SageMaker Catalog, making the unified knowledge out there for additional evaluation or machine studying functions.

Create and configure AWS Glue pocket book for lineage technology

Full the next steps to create the AWS Glue pocket book:

1. On the AWS Glue console, select Creator utilizing an interactive code pocket book.
2. Below Choices, select Begin recent and select Create pocket book.
3. Within the pocket book, use the next code to generate lineage.

   Within the following code, we add the required Spark configuration to generate lineage after which learn CSV knowledge from Amazon S3 and write in Parquet format to the Information Catalog desk. The Spark configuration consists of the next parameters:

   • spark.extraListeners=io.openlineage.spark.agent.OpenLineageSparkListener – Registers the OpenLineage listener to seize Spark job execution occasions and metadata for lineage monitoring
   • spark.openlineage.transport.kind=amazon_datazone_api – Specifies Amazon DataZone because the vacation spot service the place the lineage knowledge can be despatched and saved
   • spark.openlineage.transport.domainId=dzd_xxxxxxx – Defines the distinctive identifier of your Amazon DataZone area the place the lineage knowledge can be related
   • spark.glue.accountId={account_id} – Specifies the AWS account ID the place the AWS Glue job is operating for correct useful resource identification and entry
   • spark.openlineage.aspects.custom_environment_variables – Lists the precise surroundings variables to seize within the lineage knowledge for context concerning the AWS and AWS Glue surroundings
   • spark.glue.JOB_NAME=lineagenotebook – Units a singular identifier title for the AWS Glue job that may seem in lineage monitoring and logs

   See the next code:

   %%configure —title mission.spark -f
   {
   "—conf":"spark.extraListeners=io.openlineage.spark.agent.OpenLineageSparkListener 
   --conf spark.openlineage.transport.kind=amazon_datazone_api 
   --conf spark.openlineage.transport.domainId=dzd_xxxxxxxx 
   --conf spark.glue.accountId={account_id} 
   --conf spark.openlineage.aspects.custom_environment_variables=[AWS_DEFAULT_REGION;GLUE_VERSION;GLUE_COMMAND_CRITERIA;GLUE_PYTHON_VERSION;] 
   --conf spark.glue.JOB_NAME=lineagenotebook"
   }
   
   from pyspark.sql import SparkSession
   from pyspark.sql import SparkSession, DataFrame
   from pyspark.sql.capabilities import *
   from pyspark.sql.varieties import *
   from pyspark import SparkContext
   from pyspark.sql import SparkSession
   import sys
   import logging
   
   
   spark = SparkSession.builder.appName("lineagegluenotebook").enableHiveSupport().getOrCreate()
   
   s3_paths = {
   'absent_data': 's3://datazone-{account_id}/csv/attendance.csv'
   }
   absent_df = spark.learn.csv(s3_paths['absent_data'], header=True, inferSchema=True)
   
   absent_df.write.mode("overwrite").format("parquet").choice("path", "s3://datazone-{account_id}/attendanceparquet2/").saveAsTable("gluedbname.tablename")

4. After the pocket book has executed efficiently, navigate to the SageMaker Unified Studio area.
5. Select Venture and below Overview, select Information Sources.
6. Select the Information Catalog supply ({account_id}-AwsDataCatalog-glue_db_suffix-default-datasource).
7. Select Run to create the asset attendance_with_empnote in SageMaker Catalog.
8. Navigate to Property, select the attendance_with_empnote asset, and navigate to the LINEAGE part.

The next lineage diagram reveals an AWS Glue job that reads knowledge from the worker absence data saved in Amazon S3. The AWS Glue job remodel CSV knowledge into Parquet format, then creates a desk within the Information Catalog and registers it as an asset in SageMaker Catalog.

Seize lineage from Amazon Redshift

To exhibit the lineage, we’re creating an worker desk and an attendance desk and be part of each datasets. Lastly, we create a brand new desk known as employeewithabsent in Amazon Redshift. Full the next steps to create and configure lineage for Amazon Redshift tables:

1. In SageMaker Unified Studio, open your area.
2. Below Compute, select Information warehouse.
3. Open mission.redshift and replica the endpoint title (redshift-serverless-workgroup-xxxxxxx).
   
4. On the Amazon Redshift console, open the Question Editor v2, and connect with the Redshift Serverless workgroup with a secret. Use the AWS Secrets and techniques Supervisor choice and select the key redshift-serverless-namespace-xxxxxxxx.
   
5. Use the next code to create tables in Amazon Redshift and cargo knowledge from Amazon S3 utilizing the COPY command. Ensure the IAM function has GetObject permission on the S3 recordsdata attendance.csv and staff.csv.

   Create Redshift desk absent

   CREATE TABLE public.absent (
       employeeid character various(65535),
       date date,
       shiftstart timestamp with out time zone ,
       shiftend timestamp with out time zone,
       absent boolean,
       overtimehours integer
   );

   Load knowledge into absent desk.

   COPY absent
   FROM 's3://datazone-{account_id}/csv/attendance.csv' 
   IAM_ROLE 'arn:aws:iam::accountid:function/RedshiftAdmin'
   csv
   IGNOREHEADER 1;

   Create Redshift desk worker

   CREATE TABLE public.worker (
       employeeid character various(65535),
       title character various(65535),
       division character various(65535),
       function character various(65535),
       hiredate date,
       wage double precision,
       performancerating integer,
       shift character various(65535),
       location character various(65535)
   );

   Load knowledge into worker desk.

   COPY worker
   FROM 's3://datazone-{account_id}/csv/staff.csv' 
   IAM_ROLE 'arn:aws:iam::account-id:function/RedshiftAdmin'
   csv
   IGNOREHEADER 1;

6. After the tables are created and the info is loaded, carry out the be part of between the tables and create a brand new desk with a CTAS question:

   CREATE TABLE public.employeewithabsent AS
   SELECT 
     e.*,
     a.absent,
     a.overtimehours
   FROM public.worker e
   INNER JOIN public.absent a
   ON e.EmployeeID = a.EmployeeID;

7. Navigate to the SageMaker Unified Studio area.
8. Select Venture and below Overview, select Information Sources.
9. Choose the Amazon Redshift supply (RedshiftServerless-default-redshift-datasource).
10. On the Actions dropdown menu, select Edit.
11. Below Connection, Allow Import knowledge lineage.
12. Within the Information Choice part, below Desk Choice Standards, present a desk title or use * to generate lineage.
13. Replace the info supply and select Run to create an asset known as employeewithabsent in SageMaker Catalog.
14. Navigate to Property, select the employeewithabsent asset, and navigate to the LINEAGE part.

The next lineage diagram reveals becoming a member of two redshift tables and creating a brand new redshift desk and registers it as an asset in SageMaker Catalog.

Seize lineage from EMR Serverless job

To exhibit the lineage, we learn worker knowledge from an RDS for MySQL desk and an attendance dataset from Amazon Redshift, and be part of each datasets. Lastly, we write the info to Amazon S3 and create the attendance_with_employee desk within the Information Catalog. Full the next steps:

1. On the Amazon EMR console, select EMR Serverless within the navigation pane.
2. To create or handle EMR Serverless purposes, you want the EMR Studio UI.
   1. If you have already got an EMR Studio within the Area the place you need to create an utility, select Handle purposes to navigate to your EMR Studio, or choose the EMR Studio that you just need to use.
   2. If you happen to don’t have an EMR Studio within the Area the place you need to create an utility, select Get began after which select Create and launch Studio. EMR Serverless creates an EMR Studio for you so you may create and handle purposes.
3. Within the Create studio UI that opens in a brand new tab, enter the title, kind, and launch model to your utility.
4. Select Create utility.
5. Create an EMR Spark serverless utility with the next configuration:
   1. For Kind, select Spark.
   2. For Launch model, select emr-7.8.0.
   3. For Structure, select x86_64.
   4. For Utility setup choices, choose Use customized settings.
   5. For Interactive endpoint, allow the endpoint for EMR Studio.
   6. For Utility configuration, use the next configuration:

      [{
          "Classification": "iceberg-defaults",
          "Properties": {
              "iceberg.enabled": "true"
          }
      }]

6. Select Create and Begin utility.
7. After utility has began, submit the Spark utility to generate lineage occasions. Copy the next script and add it to the S3 bucket (s3://datazone-{account_id}/script/). Add the MySQL-connector-java JAR file to the S3 bucket (s3://datazone-{account_id}/jars/) to learn the info from MySQL.

   from pyspark.sql import SparkSession
   from pyspark.sql import SparkSession, DataFrame
   from pyspark.sql.capabilities import *
   from pyspark.sql.varieties import *
   from pyspark import SparkContext
   from pyspark.sql import SparkSession
   import sys
   import logging
   
   
   spark = SparkSession.builder.appName("lineageglue").enableHiveSupport().getOrCreate()
   
   employee_df = spark.learn.format("jdbc").choice("driver","com.MySQL.cj.jdbc.Driver").choice("url", "jdbc:MySQL://dbhostname:3306/databasename").choice("dbtable", "worker").choice("person", "admin").choice("password", "xxxxxxx").load()
   
   absent_df = spark.learn.format("jdbc").choice("url", "jdbc:redshift://redshiftserverlessendpoint:5439/dev").choice("dbtable", "public.absent").choice("person", "admin").choice("password", "xxxxxxxxxx").load()
   
   joined_df = employee_df.be part of(absent_df, on="EmployeeID", how="interior")
   
   joined_df.write.mode("overwrite").format("parquet").choice("path", "s3://datazone-{account_id}/emrparquetnew/").saveAsTable("gluedname.tablename")

8. After you add the script, use the next command to submit the Spark utility. Change the next parameters based on your surroundings particulars:
   1. application-id: Present the Spark utility ID you generated.
   2. execution-role-arn: Present the EMR execution function.
   3. entryPoint: Present the Spark script S3 path.
   4. domainID: Present the area ID (from the CloudFormation template output for DataZoneDomainid: dzd_xxxxxxxx).
   5. accountID: Present your AWS account ID.

      aws emr-serverless start-job-run --application-id 00frv81tsqe0ok0l --execution-role-arn arn:aws:iam::{account_id}:function/service-role/AmazonEMR-ExecutionRole-1717662744320 --name "Spark-Lineage" --job-driver '{
              "sparkSubmit": {
                  "entryPoint": "s3://datazone-{account_id}/script/emrspark2.py",
                  "sparkSubmitParameters": "--conf spark.executor.cores=1 --conf spark.executor.reminiscence=4g --conf spark.driver.cores=1 --conf spark.driver.reminiscence=4g --conf spark.executor.situations=2 --conf spark.hadoop.hive.metastore.consumer.manufacturing facility.class=com.amazonaws.glue.catalog.metastore.AWSGlueDataCatalogHiveClientFactory --conf spark.jars=/usr/share/aws/datazone-openlineage-spark/lib/DataZoneOpenLineageSpark-1.0.jar,s3://datazone-{account_id}/jars/MySQL-connector-java-8.0.20.jar --conf spark.extraListeners=io.openlineage.spark.agent.OpenLineageSparkListener --conf spark.openlineage.transport.kind=amazon_datazone_api --conf spark.openlineage.transport.domainId=dzd_xxxxxxxx --conf spark.glue.accountId={account_id}"
              }
          }'

      

9. After the job has executed efficiently, navigate to the SageMaker Unified Studio area.
10. Select Venture and below Overview, select Information Sources.
11. Choose the Information Catalog supply ({account_id}-AwsDataCatalog-glue_db_xxxxxxxxxx-default-datasource).
12. On the Actions dropdown menu, select Edit.
13. Below Connection, allow Import knowledge lineage.
14. Within the Information Choice part, below Desk Choice Standards, present a desk title or use * to generate lineage.
15. Replace the info supply and select Run to create an asset known as attendancewithempnew in SageMaker Catalog.
16. Navigate to Property, select the attendancewithempnew asset, and navigate to the LINEAGE part.

The next lineage diagram reveals an AWS Glue job that integrates worker info saved in Amazon RDS for MySQL and worker absence data saved in Amazon Redshift. The AWS Glue job combines these datasets by way of a be part of operation, then creates a desk within the Information Catalog and registers it as an asset in SageMaker Catalog.

Clear up

To scrub up your sources, full the next steps:

1. On the AWS Glue console, delete the AWS Glue job.
2. On the Amazon EMR console, delete the EMR Serverless Spark utility and EMR Studio.
3. On the AWS CloudFormation console, delete the CloudFormation stack vpc-analytics-lineage-sus.

Conclusion

On this put up, we confirmed how knowledge lineage in SageMaker Catalog helps you monitor and perceive the entire lifecycle of your knowledge throughout numerous AWS analytics providers. This complete monitoring system supplies visibility into how knowledge flows by way of completely different processing levels, transformations, and analytical workflows, making it a vital software for knowledge governance, compliance, and operational effectivity.

Check out these lineage visualization strategies to your personal use circumstances, and share your questions and suggestions within the feedback part.

Concerning the Authors